[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 53 items for (author: o & reilly & fj)

EMDB-16052:
Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
Method: single particle / : Absmeier E, Chandrasekaran V, O'Reilly FJ, Stowell JAW, Rappsilber J, Passmore LA

EMDB-16900:
Cryo-EM reconstruction of the native 24-mer E2o core of the 2-oxoglutarate dehydrogenase complex of C. thermophilum at 3.35 A resolution
Method: single particle / : Skalidis I, Tueting C, Kyrilis FL, Hamdi F, Kastritis PL

EMDB-14808:
Structure of the human TREX core THO-UAP56 complex (map D)
Method: single particle / : Pacheco-Fiallos FB, Vorlaender MK, Plaschka C

EMDB-17215:
Composite map of the human TREX core THO-UAP56 complex
Method: single particle / : Pacheco-Fiallos FB, Vorlaender MK, Plaschka C

EMDB-14804:
Structure of an endogenous human TREX complex bound to mRNA, composite map
Method: single particle / : Pacheco-Fiallos FB, Vorlaender MK, Plaschka C

EMDB-16753:
Tomogram of purified human TREX-mRNPs
Method: electron tomography / : Pacheco-Fiallos FB, Vorlaender MK, Plaschka C

EMDB-14805:
Structure of an endogenous human TREX complex bound to mRNA, map A
Method: single particle / : Pacheco-Fiallos FB, Vorlaender MK, Plaschka C

EMDB-14806:
Structure of an endogenous human TREX complex bound to mRNA, map B
Method: single particle / : Pacheco-Fiallos FB, Vorlaender MK, Plaschka C

EMDB-14807:
Structure of an endogenous human TREX complex bound to mRNA, map C
Method: single particle / : Pacheco-Fiallos FB, Vorlaender MK, Plaschka C

EMDB-14809:
Structure of the human TREX core THO-UAP56 complex (map E)
Method: single particle / : Pacheco-Fiallos FB, Vorlaender MK, Plaschka C

EMDB-16633:
Structure of an ALYREF-exon junction complex hexamer, obtained from TREX-EJC-RNA sample
Method: single particle / : Pacheco-Fiallos FB, Vorlaender MK, Plaschka C

EMDB-14803:
Structure of an ALYREF-exon junction complex hexamer
Method: single particle / : Pacheco-Fiallos FB, Vorlaender MK, Plaschka C

EMDB-15700:
Type 3 secretion system needle complex of Shigella flexneri
Method: single particle / : Lunelli M

EMDB-15701:
Outer membrane secretin pore of the type 3 secretion system of Shigella flexneri
Method: single particle / : Lunelli M

EMDB-15702:
Inner membrane ring and secretin N0 N1 domains of the type 3 secretion system of Shigella flexneri
Method: single particle / : Lunelli M

EMDB-15703:
Inner membrane ring of the type 3 secretion system of Shigella flexneri
Method: single particle / : Lunelli M

EMDB-14710:
Polymerase module of CPF in complex with Mpe1 and a pre-cleaved CYC1 RNA
Method: single particle / : Rodriguez-Molina JB, Passmore LA

EMDB-14711:
Polymerase module of yeast CPF in complex with the yPIM of Cft2
Method: single particle / : Rodriguez-Molina JB, Passmore LA

EMDB-14712:
Polymerase module of yeast CPF in complex with Mpe1, the yPIM of Cft2 and the pre-cleaved CYC1 RNA
Method: single particle / : Rodriguez-Molina JB, Passmore LA

EMDB-30876:
The structure of bovine thyroglobulin
Method: single particle / : Kim H, Jung HS

EMDB-12181:
Cryo-EM map of Icosahedrally averaged native core of Pyruvate Dehydrogenase Complex from Ch. thermophilum
Method: single particle / : Skalidis I, Kyrilis FL, Tueting C, Semchonok DA, Kastritis PL

EMDB-12233:
C. thermophilum core structure of mixed 2-oxoglutarate dehydrogenase complex and branched-chain 2-oxo acid dehydrogenase complex
Method: single particle / : Kyrilis FL, Semchonok DA, Skalidis I, Tueting C, Hamdi F, O'Reilly FJ, Rappsilber J, Kastritis PL

EMDB-12234:
C. thermophilum Pyruvate Dehydrogenase Complex Core from native cell extracts
Method: single particle / : Kyrilis FL, Semchonok DA, Skalidis I, Tueting C, Hamdi F, O'Reilly FJ, Rappsilber J, Kastritis PL

EMDB-10870:
Cohesin complex with loader gripping DNA
Method: single particle / : Higashi TL, Eickhoff P, Sousa JS, Costa A, Uhlmann F

EMDB-10930:
Cohesin complex with loader gripping DNA
Method: single particle / : Higashi TL, Eickhoff P, Sousa JS, Costa A, Uhlmann F

EMDB-10677:
in-cell 70S ribosome from Mycoplasma pneumoniae
Method: subtomogram averaging / : Mahamid J, Xue L

EMDB-10678:
in-cell elongating expressome from Mycoplasma pneumoniae with focused refinement on RNAP
Method: subtomogram averaging / : Mahamid J, Xue L

EMDB-10679:
in-cell elongating expressome from Mycoplasma pneumoniae
Method: subtomogram averaging / : Mahamid J, Xue L

EMDB-10680:
Multibody refinement of RNA polymerase-NusA body of Mycoplasma pneumoniae in-cell expressome
Method: subtomogram averaging / : Mahamid J, Xue L

EMDB-10681:
Multibody refinement of 30S ribosome body of Mycoplasma pneumoniae in-cell expressome
Method: subtomogram averaging / : Mahamid J, Xue L

EMDB-10682:
Multibody refinement of 50S ribosome body of Mycoplasma pneumoniae in-cell expressome
Method: subtomogram averaging / : Mahamid J, Xue L

EMDB-10683:
70S ribosome from chloramphenicol-treated Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Mahamid J, Xue L

EMDB-10684:
in-cell stalled expressome from pseudouridimycin-treated Mycoplasma pneumoniae
Method: subtomogram averaging / : Mahamid J, Xue L

EMDB-10685:
Multibody refinement of RNA polymerase body of pseudouridimycin-stalled Mycoplasma pneumoniae in-cell expressome
Method: subtomogram averaging / : Mahamid J, Xue L

EMDB-10686:
Multibody refinement of 30S ribosome body of pseudouridimycin-stalled Mycoplasma pneumoniae in-cell expressome
Method: subtomogram averaging / : Mahamid J, Xue L

EMDB-10687:
Multibody refinement of 50S ribosome body of pseudouridimycin-stalled Mycoplasma pneumoniae in-cell expressome
Method: subtomogram averaging / : Mahamid J, Xue L

EMDB-11313:
Cryo-EM structure of the dynactin complex at 3.8 Angstrom resolution
Method: single particle / : Lau CK, Lacey SE

EMDB-11314:
The shoulder domain of dynactin with underlying Arp1 filament subnits
Method: single particle / : Lau CK, Lacey SE, Carter AP

EMDB-11315:
The pointed end complex of dynactin, with accompanying Arp1/actin filament subunits
Method: single particle / : Lau CK, Lacey SE, Carter AP

EMDB-11316:
Map of the shoulder domain from dynactin to resolve the upper paddle and hook regions
Method: single particle / : Lau CK, Lacey SE, Carter AP

EMDB-11317:
The pointed end complex of dynactin bound to BICDR1
Method: single particle / : Lau CK, Lacey SE

EMDB-11318:
The pointed end complex of dynactin bound to Hook3
Method: single particle / : Lau CK, Lacey SE

EMDB-11319:
The pointed end complex of dynactin with the p150 projection docked
Method: single particle / : Lau CK, Lacey SE

EMDB-10944:
Head segment of the S.cerevisiae condensin holocomplex in presence of ATP
Method: single particle / : Merkel F, Haering CH, Hassler M, Lee BG, Lowe J

EMDB-10951:
Condensin complex from S.cerevisiae ATP-free apo non-engaged state: overall map
Method: single particle / : Lee BG, Cawood C, Gutierrez-Escribano P, Nakane T, Merkel F, Hassler M, Haering CH, Aragon L, Lowe J

EMDB-10952:
Condensin complex from S.cerevisiae ATP-free apo bridged state: focused refinement on head segment
Method: single particle / : Lee BG, Cawood C, Gutierrez-Escribano P, Nakane T, Merkel F, Hassler M, Haering CH, Aragon L, Lowe J

EMDB-10964:
Rod-shaped arm segment of the S.cerevisiae condensin complex in presence of ATP
Method: single particle / : Merkel F, Haering CH, Hassler M, Lowe J, Lee BG

EMDB-10947:
Condensin complex from S.cerevisiae ATP-free apo non-engaged state: focused refinement on arm segment
Method: single particle / : Lee BG, Cawood C, Gutierrez-Escribano P, Nakane T, Merkel F, Hassler M, Haering CH, Aragon L, Lowe J

EMDB-10948:
Condensin complex from S.cerevisiae ATP-free apo non-engaged state: focused refinement on head segment
Method: single particle / : Lee BG, Cawood C, Gutierrez-Escribano P, Nakane T, Merkel F, Hassler M, Haering CH, Aragon L, Lowe J

EMDB-10953:
Condensin complex from S.cerevisiae ATP-free apo bridged state: focused refinement on arm segment
Method: single particle / : Lee BG, Cawood C, Gutierrez-Escribano P, Nakane T, Merkel F, Hassler M, Haering CH, Aragon L, Lowe J

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more